Journal Article > ResearchFull Text
Sci Rep. 8 December 2023; Volume 13 (Issue 1); 21654.; DOI:10.1038/s41598-023-48773-3
Fokam J, Essomba RG, Njouom R, Okomo MCA, Eyangoh S, et al.
Sci Rep. 8 December 2023; Volume 13 (Issue 1); 21654.; DOI:10.1038/s41598-023-48773-3
While the SARS-CoV-2 dynamic has been described globally, there is a lack of data from Sub-Saharan Africa. We herein report the dynamics of SARS-CoV-2 lineages from March 2020 to March 2022 in Cameroon. Of the 760 whole-genome sequences successfully generated by the national genomic surveillance network, 74% were viral sub-lineages of origin and non-variants of concern, 15% Delta, 6% Omicron, 3% Alpha and 2% Beta variants. The pandemic was driven by SARS-CoV-2 lineages of origin in wave 1 (16 weeks, 2.3% CFR), the Alpha and Beta variants in wave 2 (21 weeks, 1.6% CFR), Delta variants in wave 3 (11 weeks, 2.0% CFR), and omicron variants in wave 4 (8 weeks, 0.73% CFR), with a declining trend over time (p = 0.01208). Even though SARS-CoV-2 heterogeneity did not seemingly contribute to the breadth of transmission, the viral lineages of origin and especially the Delta variants appeared as drivers of COVID-19 severity in Cameroon.
Journal Article > LetterFull Text
N Engl J Med. 30 June 2022; Volume 386 (Issue 26); 2528-2530.; DOI:10.1056/NEJMc2120183
Koundouno FR, Kafetzopoulou LE, Faye M, Renevey A, Soropogui B, et al.
N Engl J Med. 30 June 2022; Volume 386 (Issue 26); 2528-2530.; DOI:10.1056/NEJMc2120183
Journal Article > ResearchFull Text
Microbiol Resour Announc. 11 March 2021; Volume 10 (Issue 10); e00093-21.; DOI:10.1128/MRA.00093-21
Njouom R, Sadeuh-Mba SA, Tchatcheung J, Diagne MM, Dia N, et al.
Microbiol Resour Announc. 11 March 2021; Volume 10 (Issue 10); e00093-21.; DOI:10.1128/MRA.00093-21
We describe the coding-complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain obtained in Cameroon from a 58-year-old French patient who arrived from France on 24 February 2020. Phylogenetic analysis showed that this virus, named hCoV-19/Cameroon/1958-CMR-YAO/2020, belongs to lineage B.1.5 and is closely related to an isolate from France.